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Comparative analysis of human and mouse ovaries across age

The mouse is a tractable model for human ovarian biology; however, its utility is limited by incomplete understanding of how transcription and signaling differ interspecifically and with age. We compared ovaries between species using three-dimensional imaging, single-cell transcriptomics, and functional studies. In mice, we mapped declining follicle numbers and oocyte competence during aging; in human ovaries, we identified cortical follicle pockets and decreases in density. Oocytes had species-specific gene expression patterns during growth that converged toward maturity. Age-related transcriptional changes were greater in oocytes than in granulosa cells across species, although mature oocytes change more in humans. We identified ovarian sympathetic nerves and glia; axon density increased in aged ovaries and, when ablated in mice, perturbed folliculogenesis.

New Discovery: This Molecule Could Beat Rapamycin in Longevity

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Dive into the future of longevity research with Dr. Ben Blue, CEO of Ora Biomedical. We explore how Ora’s high-throughput “Wormbot” platform is conducting the world’s largest unbiased search for longevity interventions, moving beyond the narrow focus on established pathways like mTOR.

In this episode, we discuss:
• The ambitious Million Molecule Challenge and why it could revolutionize the field.
• Surprising discoveries already made, including molecules that outperform rapamycin.
• Ora’s strategic pivot to radiation resistance, with applications for astronauts, pilots, and human health.
• How their data-driven approach is uncovering interventions for resilience against toxins and other stresses.
• The journey from worm models to potential clinical trials and what’s next for the company.

Learn how Ora is scaling drug discovery to tackle aging and age-related diseases.

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Role of ubiquilin-2 liquid droplets in α-synuclein aggregation

Parkinson’s disease (PD) is an age-related, progressive neurodegenerative disorder. The hallmark of PD pathogenesis is the Lewy bodies (LBs) that accumulate in neurons in the substantia nigra region of the brain, damaging these neurons and leading to the motor symptoms of the disease. α-synuclein (α-syn), a misfolded protein, aggregates and forms fibrils, which leads to the formation of LBs. The exact molecular mechanism behind this aggregation process is yet to be uncovered. With an increasing number of elderly patients suffering from Parkinson’s and other neurodegenerative diseases worldwide, it is important to understand the aggregation process, find potential therapeutic targets to mitigate or inhibit the aggregation, and slow down the disease progression.

Liquid-liquid phase separation (LLPS), a process where a uniform mixture spontaneously divides into two liquid phases with differing component concentrations, is often considered the reason behind α-syn aggregation. Even though LLPS of α-syn was previously reported, the question remains: are they involved in catalyzing the early stage of aggregation? Ubiquilin-2 (UBQLN2) protein, mainly involved in maintaining protein homeostasis, also undergoes LLPS under certain physiological conditions. Interestingly, it is known to be associated with several neurodegenerative diseases.

Are liquid droplets formed by UBQLN2 catalyzing the α-syn protein aggregation? A team of researchers decided to unravel the involvement of UBQLN2 in α-syn aggregation and fibril formation. “By uncovering the mechanisms that trigger the aggregation process, we hope to find new ways to prevent it and ultimately contribute to the development of disease-modifying treatments,” mentioned the senior author of the study. The study was published in The EMBO Journal.

Plant hormone allows lifelong control of proteins in living animal for first time

Researchers have found a way to control protein levels inside different tissues of a whole, living animal for the first time. The method lets scientists dial protein levels up or down with great precision during the animal’s entire life, a technological advance which can help them study the molecular underpinnings of aging and disease.

Scientists at the Center for Genomic Regulation in Barcelona and the University of Cambridge successfully tested the technique by controlling how much protein was present in the intestines and neurons of the nematode worm Caenorhabditis elegans. Their findings are described in the journal Nature Communications.

Molecular basis for de novo thymus regeneration in a vertebrate, the axolotl

In humans, the loss of thymic function through thymectomy, environmental challenges, or age-dependent involution is associated with increased mortality, inflammaging, and higher risk of cancer and autoimmune disease (1). This is largely due to a decline in the intrathymic naïve T cell pool, whose generation is orchestrated by the thymic stroma, particularly thymic epithelial cells (TECs) (2). Upon challenges that affect the TEC compartment, the thymus is capable of triggering an endogenous regenerative response by engaging resident epithelial progenitors with stem cell features (35). Yet, after age-related atrophy or thymectomy resulting from myasthenia gravis or tumor removal (1), this regenerative response is unable to overcome the loss of thymic tissue, highlighting the need for therapeutic interventions.

The restoration of thymic functionality has been achieved to a limited extent via strategies targeting the thymic epithelial microenvironment or hematopoietic progenitors, modulating hormones and metabolism, or through cellular therapies and bioengineering (6). In mice, the up-regulation of Foxn1, a key transcription factor for thymus development and organogenesis (7), either directly or via its upstream effector bone morphogenetic protein 4 (BMP4), can support activity of cortical TECs (cTECs) (8, 9). Further, a combination of growth hormone and metformin has been shown to restore thymic functional mass in humans (10). Nevertheless, such strategies only lead to delayed thymic involution, and examples of complete thymus regeneration have not yet been described among vertebrates.

Because of its remarkable regenerative abilities that extend to parts of the brain, eye, heart, and spinal cord, and even entire limbs, the axolotl (Ambystoma mexicanum) is a powerful model for regeneration studies (11). The axolotl has offered insights into the mechanisms of positional identity (12), cell plasticity (13, 14), and the molecular basis of complex regeneration (1518). The regeneration of axolotl body parts relies on remnants of the missing structure, with the exception of lens tissue, which can regrow from dorsal pigmented epithelial cells during a short window during development (19). However, whether de novo regeneration can occur for an entire complex organ, in axolotls or any other vertebrate, is unknown.

Exploring the role of intestinal pathogenic bacteria in metronidazole-induced bone loss: focus on Klebsiella variicola

Osteoporosis (OP), characterized by low bone mass and altered bone microstructure, affects over 200 million people globally, resulting in annual medical costs of approximately 17.9 billion dollars in USA and 37 billion euro per year in Europe [1]. Primary OP is primarily attributed to aging and postmenopausal estrogen deficiency [2]. However, more than half of patients diagnosed with osteoporosis are also associated with risk factors for secondary osteoporosis [3]. Pharmacological interventions are a significant contributor to bone loss, particularly as such treatments are often unavoidable in many clinical scenarios. Antibiotics, among the most prescribed medications worldwide, have long been used as a potent defense against infectious agents. However, their use has steadily increased to a level that raises significant concerns [4]. In addition to fostering antibiotic resistance, which can lead to more challenging infections, prolonged antibiotic use has been implicated in the development of a variety of conditions, including asthma, allergies, obesity, and inflammatory bowel disease [5]. Previous studies have demonstrated the effects of antibiotics like penicillin and neomycin on gut microbiota and bone metabolism [6, 7], and others have reported that systemic use of multiple antibiotics increases pathogenic bacterial abundance and oral bone loss [8]. Nevertheless, the effects of different classes of antibiotics on bone metabolism and their underlying mechanisms remain poorly understood.

Notably, it has been increasingly recognized that broad-spectrum antibiotics exert a detrimental impact on the gut microbiota (GM), leading to reduced diversity, alterations in the metabolome, and disruption of gut defenses [9]. GM dysbiosis has emerged as a significant pathological mechanism in antibiotic-induced extraintestinal diseases. Recent studies have provided growing evidence that GM alterations can significantly influence bone metabolism, suggesting that the microbiota may represent a potential target for preventing bone loss [10]. Certain gut probiotics, such as Lactobacillus and Akkermansia muciniphila, have been shown to promote bone mass, while some pathogenic bacteria contribute to bone loss [11]. Consequently, it is essential to investigate whether and how GM dysbiosis mediates antibiotic-induced bone loss.

Metronidazole (MET), a widely used drug for the treatment of anaerobic infections, parasites, and certain bacterial infections, is one of the most commonly prescribed antibiotics in clinical practice [12]. MET is generally well tolerated, with reported side effects typically ranging from mild to moderate, including nausea, abdominal pain, and diarrhea [13]. Recent studies have highlighted the critical associations between MET use and gut dysbiosis. A systematic review summarizing 129 studies related to antibiotics and GM has showed that the longest duration of post-antibiotic alterations in GM was observed after treatment with MET plus clarithromycin [14]. Another study investigating the effects of different antibiotics on the human microbiome have identified that MET treatment is associated with consistent changes in GM [15].

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