Toggle light / dark theme

Our Future in Imaging Comes Into Focus

Pushing the bounds of imaging isn’t new for the San Francisco Biohub and Imaging Institute. Both organizations have already taken down barriers to research by building imaging tools that don’t exist anywhere else, as well as creating pioneering cell atlases that have redefined how we understand health and disease.

One example is the San Francisco Biohub’s research on how zebrafish embryos develop over time. In order to capture video images of whole zebrafish embryos through various developmental stages, Biohub scientists built a custom microscope, along with novel software that can find and track the movement of each cell in the videos. The “Google Earth” of embryology resulting from this research is Zebrahub, which brings a new vision to developmental biology and helps us understand our own cellular origins.

Projects like Zebrahub require scientists from a host of different disciplines. Teams across the Biohub, along with interdisciplinary partners, worked to build the microscope, develop the cell tracking software and interpret the resulting images. The collaborative nature of this project isn’t unique to our research on zebrafish — it’s part of our philosophy, and we believe collaboration is critical to drive scientific advancement in all of our work.

Bird flu persists in raw milk cheese, study demonstrates

Raw milk cheese products contained infectious avian influenza virus when made with contaminated raw milk, creating potential health risks for consumers, according to a new study.

At the same time, no virus was detected in test samples of highly acidic raw milk cheese. Feta cheese is an example of a more acidic variety.

The study is published in Nature Medicine.

Scientists are collecting toenail clippings to reveal radon exposure and lung cancer risk

At 47 years of age, Emi Bossio was feeling good about where she was. She had a successful law practice, two growing children and good health. Then she developed a nagging cough. The diagnosis to come would take her breath away.

“I never smoked, never. I ate nutritiously and stayed fit. I thought to myself, I can’t have lung cancer,” says Bossio. “It was super shocking. A cataclysmic moment. There are no words to describe it.”

Bossio had to give up her law practice to focus on treatment and healing. As part of that journey, she’s taken on a new role as an advocate to increase awareness about lung cancer. She still has no idea what caused her lung cancer. Trying to answer that question is how Bossio became interested in the research Dr. Aaron Goodarzi, Ph.D., is doing at the University of Calgary.

1,000-year-old gut microbiome revealed for young man who lived in pre-Hispanic Mexico

Analysis of preserved feces and intestinal tissue has revealed specific types of bacteria that were present in the microbiome of a young adult man who lived in Mexico about 1,000 years ago, prior to Spanish colonization. Santiago Rosas-Plaza of Universidad Nacional Autónoma de México and colleagues present these findings in PLOS One.

The consists of microorganisms, including , that naturally live in people’s intestines. Certain types of bacteria are widely associated with the human gut microbiome, but a person’s particular mix of bacteria may vary depending on factors such as age, diet, health, and where they live. Studying ancient microbiomes using mummies and can therefore deepen understanding of ancient populations and show how the human microbiome may have changed over time.

A growing number of ancient microbiomes have been revealed, including for an ancient Incan person and Germany’s “Tyrolean Iceman.” To further expand the field, Rosas-Plaza and colleagues analyzed the exceptionally well-preserved remains of a man discovered in a in Zimapán, Mexico. Prior analyses suggest the “Zimapán man” was most likely a seasonal seminomadic hunter-gatherer who was part of the ancient Mesoamerican Otopame culture and died about 1,000 years ago between the ages of 21 and 35.

‘Traffic controller’ protein that protects DNA discovered, and it may help kill cancer cells

Mayo Clinic researchers have identified a protein that acts like a traffic controller for DNA, preventing damage during cell division—a discovery that could lead to new cancer therapies, according to a study published in Nature.

“DNA is the code of life. It’s critical for how a cell functions, but it’s also critical for our own being and defines what we are,” says Zhenkun Lou, Ph.D., the Swanson/Schmucker Endowed Professor to Support Health and Cancer Research at Mayo Clinic and the senior author of the new study.

When cells divide, DNA must be copied from one cell to the next—a process called replication. Dr. Lou’s research team discovered that a protein called KCTD10 plays a surprising role in protecting DNA during this critical stage. Acting like a built-in sensor, KCTD10 helps shield the DNA replication from damage.

Alzheimer’s disease research in brain tissue from African American donors points to roles for many novel genes

The prevalence of Alzheimer’s disease (AD) is approximately two times higher in African Americans (AA) compared to white/European-ancestry (EA) individuals living in the U.S. Some of this is due to social determinants of health such as disparities in health care access and quality of education, biases in testing and higher rates of AD risk factors such as cardiovascular disease and diabetes in those who identify as African American.

Although many studies have examined differences in (a measure of the amount of protein encoded by a gene) in from AD cases and controls in EA or mixed ancestry cohorts, the number of AA individuals in these studies was unspecified or too small to identify significant findings within this group alone.

In the largest AD study conducted in brain tissue from AA donors, researchers from Boston University Chobanian & Avedisian School of Medicine have identified many genes, a large portion of which had not previously been implicated in AD by other , to be significantly more or less active in tissue from AD cases compared to controls. The most notable finding was a 1.5 fold higher level of expression of the ADAMTS2 gene in brain tissue from those with autopsy-confirmed AD.

Smart microfibers turn everyday objects into health care monitors and energy devices

New research led by the University of Cambridge, in collaboration with Hong Kong University of Science and Technology (GZ) and Queen Mary University of London, could redefine how we interact with everyday tools and devices—thanks to a novel method for printing ultra-thin conductive microfibers.

Imagine fibers thinner than a human hair (nano-to micro-scale in diameter) that can be tuned on-demand to add sensing, energy conversion and electronic connectivity capabilities to objects of different shapes and surface textures (such as glass, plastic and leather). This is what the researchers have achieved, including in unconventional materials like porous graphene aerogels, unlocking new possibilities for human-machine interaction in various everyday settings.

The researchers present a one-step adaptive fiber deposition process using 3Dprinting, set up to satisfy the fast-changing demands of users. The process enables the on-demand deployment of conductive material layers on different surface areas, dependent on the model’s geometry, at the point of use. The findings are reported in the journal Advanced Fiber Materials.

Sleep patterns linked to variation in health, cognition, lifestyle and brain organization

Researchers led by Aurore Perrault at Concordia University, Canada and Valeria Kebets at McGill University, Canada, have used a complex data-driven analysis to uncover relationships among multiple aspects of sleep and individual variation in health, cognition, and lifestyle.

Published in PLOS Biology, the study reveals five –biopsychosocial profiles and their associated patterns of functional connectivity among brain regions.

Most studies of sleep focus on a single aspect, such as duration, and examine how it relates to a single outcome, like poor mental health. However, trying to understand and predict outcomes by combining the results of many different single-association studies invariably fails. The new study by Perrault and team takes a different approach. Using a sample of 770 people from the Human Connectome Project dataset, they conducted a multivariate, data-driven analysis.

AI-radar system tracks subtle health changes by assessing patient’s walk

Engineering and health researchers at the University of Waterloo have developed a radar and artificial intelligence (AI) system that can monitor multiple people walking in busy hospitals and long-term care facilities to identify possible health issues.

The new technology—housed in a wall-mounted device about the size of a deck of cards—uses AI software and radar hardware to accurately measure how fast each person is walking. A paper on their work, “Non-contact, non-visual, multi-person hallway gait monitoring,” appears in Scientific Reports.

“Walking speed is often called a functional vital sign because even subtle declines can be an early warning of health problems,” said Dr. Hajar Abedi, a former postdoctoral researcher in electrical and computer engineering at Waterloo.

/* */